PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0037341
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 346aa    MW: 38105 Da    PI: 9.7431
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0037341genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP68.77.3e-222794171
                 E2F_TDP  1 rkeksLrlltqkflklleksee..givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                            rk+ksL ll+++fl+l+++ +     + l+++a++L    v   rRRiYDi+NVLe+++l+++k+kn ++wkg
  RcHm_v2.0_Chr5g0037341 27 RKQKSLSLLCSNFLSLYNRDDGatALIGLDDAASRL---GV--VRRRIYDIVNVLESVGLLSRKSKNTYTWKG 94
                            79****************966546899*********...99..9***************************98 PP
2E2F_TDP68.67.8e-22129212271
                 E2F_TDP   2 keksLrlltqkflkllek..seegivtlnevakeLvse.......dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                             +eksL ll+q+f+kl+ +  se++ ++l+e+ak L+          +++k+RRiYDi+NVL+++nliek     + k+++rw g
  RcHm_v2.0_Chr5g0037341 129 REKSLALLAQNFVKLFVCtgSESESISLDEAAKLLLGVgdahnvsVMRTKVRRIYDIANVLSSVNLIEKthtadTGKPAYRWLG 212
                             79************988855677************87788**9*9999************************999*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MSSSAAAAVD RPPATTTTTR RDASYSRKQK SLSLLCSNFL SLYNRDDGAT ALIGLDDAAS  60
RLGVVRRRIY DIVNVLESVG LLSRKSKNTY TWKGFGAVPN ALKELREEGL DLTPIPAACN  120
NNPLDETKRE KSLALLAQNF VKLFVCTGSE SESISLDEAA KLLLGVGDAH NVSVMRTKVR  180
RIYDIANVLS SVNLIEKTHT ADTGKPAYRW LGLNGRRDGL NLNSELNSEQ AKKRSFGTDL  240
TNASSKRSKV VEKRVQDQGE VENCNSDGGG GAKESSKSYQ FGPFAPVAVP RARKGVDVNK  300
VCWESLGAYY RPQYQNQAMK ELFSHYREAW MLWNSQVAEK NPIQSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.25e-87E2F/DP family protein