PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0037201
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 232aa    MW: 25480.9 Da    PI: 8.9976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0037201genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-1175122454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ +++L
  RcHm_v2.0_Chr5g0037201  75 SKACREKLRRDRLNDKFVELGSILEPG---RPPKTDKAAILIDAVRMVNQL 122
                             6789**********************8...89***************9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MVSPENTNWL YDYGLMDDAN FPVSSSAFNW PVQPNIPGSS SVSAELDGSL GDVEGLKESG  60
SKKRVRSESS SASSSKACRE KLRRDRLNDK FVELGSILEP GRPPKTDKAA ILIDAVRMVN  120
QLRGEAQKLK DSNSSLQEKI KELKTEKTEL RDEKQRLKSE KEKLEQQLKA MTAQPSFMPA  180
PPAIPAAFAA QGQAHGNKMV PFIGYPGVAM WQFMPPAAVD TSQDHVLRPP VA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-71bHLH family protein