PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0036871

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 451aa MW: 49559.8 Da PI: 6.8951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0036871	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.5e-06	342	380	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L RcHm_v2.0_Chr5g0036871 342 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 380 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MADEFQNTGN WWDSSSTSRN RFETGASPPS SGLNSLGSFG WQPDMIEIKA RSSMDSGSVS 60 GTSSMVFHDP QKLQGSDSSS GGDPSLHMMG LGLNSQATDW NQAIFRGEKA ETSFRSILQD 120 NMNSNANFQQ ETHDQQQLQW RDKLFTGSSG EMSRGFSLDQ TQFSPQYSSG ESTVTCQGLP 180 TSFQMDSAAL YGTSPTTILQ GLLGSPHDHN QPQPPSPSII FPYQASYGIN STELLPSWSN 240 KVPQFLRTSP PKHPSNSPHS HLQFSNNAPF WNAPHEAAMK DVRPTFFPSL QPQFPTARFD 300 EKPKNISEVH QDSGAVVKKS GSEAASKRPR NETSSTLPAF KVRKEKMGDR ITALQQLVSP 360 FGKTDTASVL SEAIEYIKFL HEQVSVLSNP YMKSGAAIQH QQKSDKSKDL EGPKHDLRSR 420 GLCLVPVSST FPAAHEPTVD FWTPTFGGTF R

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MADEFQNTGN WWDSSSTSRN RFETGASPPS SGLNSLGSFG WQPDMIEIKA RSSMDSGSVS  60
GTSSMVFHDP QKLQGSDSSS GGDPSLHMMG LGLNSQATDW NQAIFRGEKA ETSFRSILQD  120
NMNSNANFQQ ETHDQQQLQW RDKLFTGSSG EMSRGFSLDQ TQFSPQYSSG ESTVTCQGLP  180
TSFQMDSAAL YGTSPTTILQ GLLGSPHDHN QPQPPSPSII FPYQASYGIN STELLPSWSN  240
KVPQFLRTSP PKHPSNSPHS HLQFSNNAPF WNAPHEAAMK DVRPTFFPSL QPQFPTARFD  300
EKPKNISEVH QDSGAVVKKS GSEAASKRPR NETSSTLPAF KVRKEKMGDR ITALQQLVSP  360
FGKTDTASVL SEAIEYIKFL HEQVSVLSNP YMKSGAAIQH QQKSDKSKDL EGPKHDLRSR  420
GLCLVPVSST FPAAHEPTVD FWTPTFGGTF R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-86	bHLH family protein