PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0032281

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 635aa MW: 72984.9 Da PI: 7.4526

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0032281	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.6	5.1e-12	7	51	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W Ede+l+ av ++G + W++I+ ++ +++kqck rw+++l RcHm_v2.0_Chr5g0032281 7 LWKNTEDEILKVAVMKYGINEWDRISTLLN-SKSAKQCKARWFQWL 51 5999************************.**********997 PP
2	Myb_DNA-binding	44.1	4.9e-14	58	102	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa+ ++ gRt+ qc++r+ k+l RcHm_v2.0_Chr5g0032281 58 VEWTREEDEKLLHLAKLMPSQ-WRTIAKNVN-GRTASQCIERYEKLL 102 68****************9.*****.*********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MMIRGGLWKN TEDEILKVAV MKYGINEWDR ISTLLNSKSA KQCKARWFQW LEPSIKKVEW 60 TREEDEKLLH LAKLMPSQWR TIAKNVNGRT ASQCIERYEK LLDAACNDNY EDPRRLRAGE 120 IDPNPETRPA RPDPVDMDED EKEMLSEARA RLANTKGKKA KRKAREAQLE EARRIASLQK 180 RRELKAAGID DKSTWNQQKR KRNGIDYNAE IPFEKKPPLG FYNVGDEDRE VVLEQHDQFP 240 LTIEELEGKR RVDVEAELRK QDIAKNKISN KLNIDDFSNV ETVRKRSKLM LPAPQISDTE 300 LEEIAKMSNA GDLVGSENGF TDANYFGVTH ATRRFGLTPS KGTVIRDELH INEGIDKDDG 360 VNLKQLKCSQ RFRINNLHKG LSNLPKPKSE YQIVVQPVPE DNEEAGHQAL VTKKRSKVLN 420 MRADEDKHGA VAVLPSTIEQ ADQIIRKELL SLKEHDCAKY PIDEKVVTTF EEDELREADS 480 MIVEEAQYPG EAQKSCSPGC CLSSIAEDGN PVACLRSEFE KVQNEFEKVK KKAQIIENKV 540 KVRTDGYEKR AKDVLWPKIE ETFKQMDTAT KELECFQALQ KQEQLAATSR INNMWEEVQK 600 QKELEQTLQK RYGDLVVKLE KKQHQSKGAV PKMLF

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MMIRGGLWKN TEDEILKVAV MKYGINEWDR ISTLLNSKSA KQCKARWFQW LEPSIKKVEW  60
TREEDEKLLH LAKLMPSQWR TIAKNVNGRT ASQCIERYEK LLDAACNDNY EDPRRLRAGE  120
IDPNPETRPA RPDPVDMDED EKEMLSEARA RLANTKGKKA KRKAREAQLE EARRIASLQK  180
RRELKAAGID DKSTWNQQKR KRNGIDYNAE IPFEKKPPLG FYNVGDEDRE VVLEQHDQFP  240
LTIEELEGKR RVDVEAELRK QDIAKNKISN KLNIDDFSNV ETVRKRSKLM LPAPQISDTE  300
LEEIAKMSNA GDLVGSENGF TDANYFGVTH ATRRFGLTPS KGTVIRDELH INEGIDKDDG  360
VNLKQLKCSQ RFRINNLHKG LSNLPKPKSE YQIVVQPVPE DNEEAGHQAL VTKKRSKVLN  420
MRADEDKHGA VAVLPSTIEQ ADQIIRKELL SLKEHDCAKY PIDEKVVTTF EEDELREADS  480
MIVEEAQYPG EAQKSCSPGC CLSSIAEDGN PVACLRSEFE KVQNEFEKVK KKAQIIENKV  540
KVRTDGYEKR AKDVLWPKIE ETFKQMDTAT KELECFQALQ KQEQLAATSR INNMWEEVQK  600
QKELEQTLQK RYGDLVVKLE KKQHQSKGAV PKMLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	202	KRRELKAAGIDDKSTWNQQKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-144	MYB family protein