PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0025741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23790.3 Da PI: 6.2961 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.3e-08 | 45 | 88 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++ +++ Lr+l+P + ++K +i e + YIk+Lq RcHm_v2.0_Chr5g0025741 45 HAERRRRQKLGDRLLILRSLVPII-----TNMTKETIIEDSITYIKELQ 88 79*********************6.....58*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MEFVGSALSE LGTTDQQKPG CRGGRMWGRR RHQEDDSSFK SKNLHAERRR RQKLGDRLLI 60 LRSLVPIITN MTKETIIEDS ITYIKELQTN VNILQEQLFK MEASAQEALE LRKDEVDAAE 120 EMKKFGIQIG VDVAQIDGNK LWVKAIIEKK RGGFTKLVEA MTYFGFELTD TNIITSNGAM 180 VVSSVLTGFH CDTLQVEQTR ELILEIVNGI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 51 | RRRHQEDDSSFKSKNLHAERRRR |
2 | 29 | 53 | RRRHQEDDSSFKSKNLHAERRRRQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 4e-51 | bHLH family protein |