PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0024601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 27111.7 Da PI: 4.55 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.1 | 6.6e-08 | 163 | 206 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++i ++ +eL +l+P K++ ae+L+ A +Y+k Lq RcHm_v2.0_Chr5g0024601 163 IAARDRRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYNYVKFLQ 206 56799*****************95.....5******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MALNWEVPQF FDSDMTCIQQ NLEAELVGDF LQCVNSDYSN PHNFLDPWYD PCNLLNLENP 60 DFDHLLPPFS LKPDMFPVQD FEPYPQPKRQ KCSKEYYCRD LTPTFSNGFA PNPCPRPEFF 120 SGAFTTPVLN FQHPEVVDGN TRKTSVENVG KKVEERSVSP QSIAARDRRR KITEKTQELG 180 KLVPGGSKMN TAEMLTAAYN YVKFLQAQMG ILEFMGSFQG SLMVLINWIM SYEDDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 2e-19 | bHLH family protein |