PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0024181
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 277aa    MW: 31009.9 Da    PI: 5.8678
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0024181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.74.5e-55881921102
                   NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                             ql++fw +q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++
  RcHm_v2.0_Chr5g0024181  88 QLQVFWGNQmqdIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAIS 174
                             89*****9988889************************************************************************* PP

                   NF-YC  85 rtdifdflvdivprdelk 102
                             rtd+fdflvdi+prdelk
  RcHm_v2.0_Chr5g0024181 175 RTDVFDFLVDIIPRDELK 192
                             ***************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MDHSEQTQQQ QQQQQQQQPV VGVVAGSGQM SYAPPSYQTA PMVASGPPAV AIPSPTQPPP  60
TFSNSPHQIA YQQAQHFHSQ QQQQQQQQLQ VFWGNQMQDI EQTTDFKNHS LPLARIKKIM  120
KADEDVRMIS AEAPVIFAKA CEIFILELTL RSWIHTEENK RRTLQKNDIA AAISRTDVFD  180
FLVDIIPRDE LKEEGLGVTK ANIPVVGSAA DVPYYYVPPQ HPVGAPGMIV GKPVDQATMY  240
GAQQPRPPMA FMPWAQSQPQ QPLPQQQQQT QQQQTDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161167RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.15e-76NF-YC family protein