PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr5g0023221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 37605.3 Da PI: 7.0584 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.2e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l++ v+ +G g+W++++++ g+ R++k+c++rw +yl RcHm_v2.0_Chr5g0023221 13 RGLWSPEEDDKLIKHVTTHGHGSWSSVPKHAGLERCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 1e-17 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ RcHm_v2.0_Chr5g0023221 66 RGSFTSEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence |
MGHRCCGKHK VKRGLWSPEE DDKLIKHVTT HGHGSWSSVP KHAGLERCGK SCRLRWINYL 60 RPELKRGSFT SEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL 120 DPQTHNLISS HKRSVASNKI AGSNAKLQSH IDQKRPVFTV NNMSQIIDSS TEINYSISPP 180 IVPFSNAQPP TVQPIMATPI DNQYLVHNPN SGWTSVTDIP TFPDSTQSIT SASSSSAFGH 240 LDGSNCIWAA GADPFEAAPG AMELQGEQSK GQVVQVEQEK EKLLEMEMKA MQDMDIAASF 300 DQSSSFDFSL VEYCSTLMSG VVPHDHVNYS AADFTWNF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12720.1 | 9e-88 | MYB family protein |