PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0021591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33818.9 Da PI: 7.0955 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++ G g+W++I++ g+ R++k+c++rw +yl RcHm_v2.0_Chr5g0021591 17 RGLWSPEEDEKLMNHIHNSGHGSWSSIPKIAGLERCGKSCRLRWINYL 64 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ +++d+++ G++ W+ Ia+ m+ gRt++++k++w++ RcHm_v2.0_Chr5g0021591 70 RGSFSQQEERIIIDVHRVVGNR-WAQIAKQMP-GRTDNEVKNFWNS 113 899*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MSINTGHNCC SKQKVKRGLW SPEEDEKLMN HIHNSGHGSW SSIPKIAGLE RCGKSCRLRW 60 INYLRPDLKR GSFSQQEERI IIDVHRVVGN RWAQIAKQMP GRTDNEVKNF WNSCIKKKLI 120 SQGLDPNTHN LIIPAASDSK SSHDSSSLHG SSSSTIPTYL YQSPNMVWTD HFQEPYPRGS 180 QPSMEKSKVP TISSFSHHFY PSELDIIIEN CKTWGTGSSI ESTTAEPAEM EYMSMKAEQK 240 EESCEVQTEN GSCSVLNYNG RQTSMDACSF GSCNLSNFDF VESTLVPCEM DYHLRPIRQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 6e-77 | MYB family protein |