PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0020601

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 888aa MW: 101898 Da PI: 8.0168

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0020601	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.7	1.3e-25	91	199	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvk 69 +fY+eYAk++GF ++++s++s+ +g++++++f Cs++g++ e++k+ ++ r +r+ ++t+Cka+++vk RcHm_v2.0_Chr5g0020601 91 SFYKEYAKSMGFAAVIKASRRSRASGKFIDAKFGCSRYGTKPETSKAqtaepgsysressiclkrKRGGRASRSLEKTDCKACMHVK 177 5**************************************9999999**********988788899************ PP FAR1 70 kekdgkwevtkleleHnHelap 91 +++dg+w v +l +eHnHe++p RcHm_v2.0_Chr5g0020601 178 RRQDGRWTVCTLIKEHNHEIFP 199 *****************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence
MRIDLEQPSG ESHKADNGPS GREEDTSGDR AIVSVTNVPI NDKENTGKNV NGSVSNSKNR 60 VDARDEINLN APKDLELHDG LEFESKEEAF SFYKEYAKSM GFAAVIKASR RSRASGKFID 120 AKFGCSRYGT KPETSKAQTA EPGSYSRESS ICLKRKRGGR ASRSLEKTDC KACMHVKRRQ 180 DGRWTVCTLI KEHNHEIFPD EAYFFRGHRK LDLSSGNVDG IHAIRRRTKN MFANMSRHSG 240 GYKKSSNQKG GGKNQSPSLQ HLSLEEGDAQ VMLDHFLCMQ DENPNFFCAI DLNEEQRLRN 300 VFWVDAKGRL DYGNFSDVVF LDTTYIKNEY KLPFAPFIGV NHHLQFILLG CALLADESKS 360 NYVWLMRAWL KAMGGRAPRV ILTDQDKFLK EAIAEVFPDS RHCFCLWHIL GKIHEKLGYV 420 IRQHDQFMEK FNKCIFKSWT NEQVEIRWFK MVDRFNLRND IWLQSLYEDR RQWIPAYLRD 480 IFLAGMSTTQ RSESINCFFD KYMQRRTTLK EFFEQYNTIL REKYEEEAKA DFETWHKQPA 540 LKSPSPFGKQ MATMYTHAIF KKFQVEVLGV VACHPKKEAE DGGIKTFRVQ DFEENQHFIV 600 EWNEMTSDIS CLCHSFEFNG FLCRHVLIVL QISGVHNIPS QYILKRWTKD AKSRETRGVG 660 SSSVESRVQR YNDLCRRAFE LGDEGSLSQE SYNIAFMALE EALRNCENIN NSIQSVIEPV 720 SPEAHGPHSF EGMNQGNSTN KTNKKNITSK KGQVHSEPEV LTIEMQESWQ GMEQLSSRAP 780 TLDGYIGPQQ IVQGMGPLNT VSSRRDNYYS NQHMQGLGQL NSITPIQDAQ YITQQRLHGV 840 GQLHFRPQTI PSFVIEDDLQ DMDQSTVGRT QIHGLASNHL QSKHPSRQ

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence

MRIDLEQPSG ESHKADNGPS GREEDTSGDR AIVSVTNVPI NDKENTGKNV NGSVSNSKNR  60
VDARDEINLN APKDLELHDG LEFESKEEAF SFYKEYAKSM GFAAVIKASR RSRASGKFID  120
AKFGCSRYGT KPETSKAQTA EPGSYSRESS ICLKRKRGGR ASRSLEKTDC KACMHVKRRQ  180
DGRWTVCTLI KEHNHEIFPD EAYFFRGHRK LDLSSGNVDG IHAIRRRTKN MFANMSRHSG  240
GYKKSSNQKG GGKNQSPSLQ HLSLEEGDAQ VMLDHFLCMQ DENPNFFCAI DLNEEQRLRN  300
VFWVDAKGRL DYGNFSDVVF LDTTYIKNEY KLPFAPFIGV NHHLQFILLG CALLADESKS  360
NYVWLMRAWL KAMGGRAPRV ILTDQDKFLK EAIAEVFPDS RHCFCLWHIL GKIHEKLGYV  420
IRQHDQFMEK FNKCIFKSWT NEQVEIRWFK MVDRFNLRND IWLQSLYEDR RQWIPAYLRD  480
IFLAGMSTTQ RSESINCFFD KYMQRRTTLK EFFEQYNTIL REKYEEEAKA DFETWHKQPA  540
LKSPSPFGKQ MATMYTHAIF KKFQVEVLGV VACHPKKEAE DGGIKTFRVQ DFEENQHFIV  600
EWNEMTSDIS CLCHSFEFNG FLCRHVLIVL QISGVHNIPS QYILKRWTKD AKSRETRGVG  660
SSSVESRVQR YNDLCRRAFE LGDEGSLSQE SYNIAFMALE EALRNCENIN NSIQSVIEPV  720
SPEAHGPHSF EGMNQGNSTN KTNKKNITSK KGQVHSEPEV LTIEMQESWQ GMEQLSSRAP  780
TLDGYIGPQQ IVQGMGPLNT VSSRRDNYYS NQHMQGLGQL NSITPIQDAQ YITQQRLHGV  840
GQLHFRPQTI PSFVIEDDLQ DMDQSTVGRT QIHGLASNHL QSKHPSRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein