PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr5g0019651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 254aa MW: 28526.9 Da PI: 5.4406 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E +l+++ +k+lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr5g0019651 55 RGKITEDEKDLIIRMHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNSI 99 8999******************.*********.***********975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence |
MGRYAGFEKG GLKKGTWSAC EDQVLKDYVK KHGLKRCGKS VRLRWLNYLR PGIKRGKITE 60 DEKDLIIRMH KLLGNRWSLI AGRIPGRTDN EIKNYWNSIL RKNVGEEKER ESEVSRNEII 120 KENLPSLAED DGHPHLTKCD EVLGGGGGLD CFASDVNVEE DHRHRCLGRT STDTTTLSPG 180 VGVEIGGGAN QDIQPTGDDL NYNAITWKDS IMDLNGGQLD ISEFLQSDDF STFWDSDRLM 240 NFEIGGCSTM NYDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-44 | MYB family protein |