PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0013131

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 353aa MW: 38873.8 Da PI: 7.3776

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0013131	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.6e-33	192	249	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers edp++v++tYeg+Hnh+ RcHm_v2.0_Chr5g0013131 192 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCGVKKRVERSFEDPSTVITTYEGQHNHP 249 8********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MSDHHHEPKD LYYHDLFQYD HGQLNGGMIM NNPKVSGSSS PAYNNLLQGF DVPSYMNTSF 60 TEYNSLATAF GLSSSPSDHE VFSSIDEGSH QKPVDNLGYL GGGGGHVSSD GEVHVTPNSS 120 VSSSSAEAGA EEDSGNKSKK DRQQPQPKGS SEEGGDVHSP KKSSKIVKKK GEKKQREPRF 180 AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCGVKKRVER SFEDPSTVIT 240 TYEGQHNHPI PATLRGSINI NAAHHHHALF SPSSMYASAA PTTSSSGPSF PQEYLFQMAT 300 PQMMMRNDGG GAGPGGIYSS RNVNFPQQYH QLPADQYGLL QDVVPSMFFK HEP

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MSDHHHEPKD LYYHDLFQYD HGQLNGGMIM NNPKVSGSSS PAYNNLLQGF DVPSYMNTSF  60
TEYNSLATAF GLSSSPSDHE VFSSIDEGSH QKPVDNLGYL GGGGGHVSSD GEVHVTPNSS  120
VSSSSAEAGA EEDSGNKSKK DRQQPQPKGS SEEGGDVHSP KKSSKIVKKK GEKKQREPRF  180
AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCGVKKRVER SFEDPSTVIT  240
TYEGQHNHPI PATLRGSINI NAAHHHHALF SPSSMYASAA PTTSSSGPSF PQEYLFQMAT  300
PQMMMRNDGG GAGPGGIYSS RNVNFPQQYH QLPADQYGLL QDVVPSMFFK HEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	2e-54	WRKY family protein