PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0008861

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Dof

Protein Properties

Length: 347aa MW: 37542.1 Da PI: 7.8845

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0008861	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.7e-39	56	116	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ RcHm_v2.0_Chr5g0008861 56 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 116 7899******************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MLMDQQKMVL ISSTTNDWPQ IDDDDDQNHK GVMGSTTAVG ASRLMEKPGQ EQLQQQQQAL 60 KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRVKRPSS 120 SSAVDNGASS SASSAPNSGN SNSNPNAQQN HPQIDLASNS NHHMNQLFYG LGSNQPDHMG 180 INPFTTSGFD QFSALGLGFG DQRFNPAATS KQIQDLVAAN SLHSSDHSIF NSTSYSTAPT 240 MASVLASKFI NGGFKDVRGN NNQYFQNLLP FEDLQIAAAG NGGGQAVKEV KVEDGGQSRM 300 GWSTNHQANT EQMGLSSDPT LYWSSSNLGA NNWHDPANLG SSVSSLI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MLMDQQKMVL ISSTTNDWPQ IDDDDDQNHK GVMGSTTAVG ASRLMEKPGQ EQLQQQQQAL  60
KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRVKRPSS  120
SSAVDNGASS SASSAPNSGN SNSNPNAQQN HPQIDLASNS NHHMNQLFYG LGSNQPDHMG  180
INPFTTSGFD QFSALGLGFG DQRFNPAATS KQIQDLVAAN SLHSSDHSIF NSTSYSTAPT  240
MASVLASKFI NGGFKDVRGN NNQYFQNLLP FEDLQIAAAG NGGGQAVKEV KVEDGGQSRM  300
GWSTNHQANT EQMGLSSDPT LYWSSSNLGA NNWHDPANLG SSVSSLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	4e-36	Dof family protein