PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0008851
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Dof
Protein Properties Length: 295aa    MW: 31843.1 Da    PI: 9.6863
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0008851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222e-383393262
                  zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                            +++ +kcprC+s ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+++
  RcHm_v2.0_Chr5g0008851 33 HHEPQKCPRCESLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKRAK 93
                            57889***************************************************99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MQGERDQQQQ NNQERKVNQQ QQQGQQQPQQ QQHHEPQKCP RCESLNTKFC YYNNYSLSQP  60
RYFCKACRRY WTQGGTLRNV PVGGGCRKGK RAKTMSSSSS ATSSRSVLQP QPQPQDHHQL  120
QQRPLMMSTG PAALNSLAGS QYYPGGTGYL TSMPFAQSLN HLGGSGQLGS GGGASNLGLL  180
HGFNAISSYG QRQMQSQLFK GNMEPPPPYP SEDHRGLLLQ PARPSGSMTD WPESFINKSH  240
ASVSASAAAA SAGQSALWTT TMGHNTSTTS GAGPSLNSAQ WPDDIAGSFA AGPPQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-29Dof family protein