PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0008581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 190aa MW: 21373.2 Da PI: 8.9321 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 13 | 64 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 r+ + +E++RR++++ ++eL +llP++ +s+ s + +Av+YIk+Lq RcHm_v2.0_Chr5g0008581 13 RTDRKTIEKNRRNQMKALYSELNSLLPHQ---RSREvTSLPDQIDEAVNYIKKLQ 64 778899**********************9...88998*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence |
MDQQQYPSSS SSRTDRKTIE KNRRNQMKAL YSELNSLLPH QRSREVTSLP DQIDEAVNYI 60 KKLQTNLEKM REKKDSQMGV ERITINNNGG SRRGVNGGGL RLPQIEIREM GSVLDVVLIT 120 GLDFQFMFEG SIRMLLEEGA DIVNASFSVV EDTIFHTIHS KIGESAPGPV AARISDRLRK 180 FVNEASTTAF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-50 | bHLH family protein |