PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0006031

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 361aa MW: 41364 Da PI: 6.3677

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0006031	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.9	2.6e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++++G g+W+t ++ g+ R++k+c++rw +yl RcHm_v2.0_Chr5g0006031 14 KGPWTPEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.1	1.8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +v+++ lG++ W++Ia++++ gRt++++k++w+++ RcHm_v2.0_Chr5g0006031 67 RGRFSFEEEETIVQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDQKLVDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIVQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDFSSILY NSSHHHPQVN FSRLLGMQQM GLNPELLRLA TILSSHRERN 180 SNFFIQNDQQ QHLCSPQNDQ IPVQLVQSSQ LQEPFQENVP VCATLNTGDI PFPHEVQPPT 240 ITDFSSQNCQ ISEWQSNGEA PSNFTENQYV QLPSLTYYDG SSDHQIVSDV SPETSNLYSY 300 NSNNQNFNFT SVFSTPCSSP TPLNSNSTTY FNSGTEDERE SYCSNMLKFD IPNILDDFIH 360 V

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MGRAPCCDKN GLKKGPWTPE EDQKLVDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIVQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDFSSILY NSSHHHPQVN FSRLLGMQQM GLNPELLRLA TILSSHRERN  180
SNFFIQNDQQ QHLCSPQNDQ IPVQLVQSSQ LQEPFQENVP VCATLNTGDI PFPHEVQPPT  240
ITDFSSQNCQ ISEWQSNGEA PSNFTENQYV QLPSLTYYDG SSDHQIVSDV SPETSNLYSY  300
NSNNQNFNFT SVFSTPCSSP TPLNSNSTTY FNSGTEDERE SYCSNMLKFD IPNILDDFIH  360
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-112	MYB family protein