PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr5g0005721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29682.9 Da PI: 5.2129 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.4 | 7.9e-14 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +++++G +W+ ++ g+ R++k+c++rw +yl RcHm_v2.0_Chr5g0005721 17 KGPWSPDEDHKLIAYIQRYGIWNWSQMPKPAGLARSGKSCRLRWMNYL 64 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.2e-17 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++ + +G++ W+ Ia++++ gRt++++k++w+++l RcHm_v2.0_Chr5g0005721 70 RGNFSKEEEETIIKLQQNMGNR-WSVIAAKLP-GRTDNEIKNYWHTHL 115 89********************.*********.************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence |
MVRSSTQQCE EKRPLKKGPW SPDEDHKLIA YIQRYGIWNW SQMPKPAGLA RSGKSCRLRW 60 MNYLRPDIKR GNFSKEEEET IIKLQQNMGN RWSVIAAKLP GRTDNEIKNY WHTHLKRRLN 120 NDKAKSGENT SSETETFLLD KEAPKASQLE TSRENFSSSS SGIADEVYHQ PQIPEQQSIC 180 ETFGELQSLW TDSQVTSTAV ENSEAMFTDS AGFTLSSAAD QVWLQQEPIF QCGSYSDDAH 240 VPMSDYWVNL SVQSDETNGM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-56 | MYB family protein |