PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0004831

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 442aa MW: 47499.5 Da PI: 6.5031

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0004831	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	332	369	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L RcHm_v2.0_Chr5g0004831 332 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 369 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MAEEYQGGIC GGNWWSSASR HALVATSPCS VGFNDHMGSF GCPNDVDMIK SRSTCGGFGL 60 NSSSSTLPSD LNQALLLRGS SGRGESNFHN SMLQEDMGSF KQPMNNQDFP LDQSSSSSGF 120 PITSSPANNS YGGGFPSQLL QSLYDPEEVV VPQPQLQSLF NNGSSSMSYS SAESYGTLGS 180 NDLLSSPTSS TTCWPRYSPS CLRPSLQPRQ QQQQQQPRGG SGSGGGGGLH FSNINTPFWN 240 APAAALNHDI RSTGLFPSLS QSQYTAPTAA IYDEHKPITS GNFTKPTTTE DVQDSSSSTV 300 KKSGSSFCSS TEPVFKRARI ETPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH 360 EAIEYIKFLH DQVGVLSTPY MKNGAPMQHQ QGCDKLKEAE QEGKHDLKSR GLCLVPISST 420 FPVANETTAD FWTPTFGATS FR

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MAEEYQGGIC GGNWWSSASR HALVATSPCS VGFNDHMGSF GCPNDVDMIK SRSTCGGFGL  60
NSSSSTLPSD LNQALLLRGS SGRGESNFHN SMLQEDMGSF KQPMNNQDFP LDQSSSSSGF  120
PITSSPANNS YGGGFPSQLL QSLYDPEEVV VPQPQLQSLF NNGSSSMSYS SAESYGTLGS  180
NDLLSSPTSS TTCWPRYSPS CLRPSLQPRQ QQQQQQPRGG SGSGGGGGLH FSNINTPFWN  240
APAAALNHDI RSTGLFPSLS QSQYTAPTAA IYDEHKPITS GNFTKPTTTE DVQDSSSSTV  300
KKSGSSFCSS TEPVFKRARI ETPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH  360
EAIEYIKFLH DQVGVLSTPY MKNGAPMQHQ QGCDKLKEAE QEGKHDLKSR GLCLVPISST  420
FPVANETTAD FWTPTFGATS FR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	6e-57	bHLH family protein