PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0004791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 271aa    MW: 30703.3 Da    PI: 5.4333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0004791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10100146455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ++ ++Er+RR+++ +++ +Lr+l+P       + ++Ka+i+e  + YI +Lq
  RcHm_v2.0_Chr5g0004791 100 KNLKAERKRRAKLSDRLLKLRSLVPII-----TNMNKATIVEDSITYIYELQ 146
                             56689*********************6.....58**************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MNCAVVIFHS CSTNFFPILP SSTHTKWHDT LVSTTYMNLA PNTLPLWKML VDHYLNDMEF  60
VGSALDELCL SPDQEGCSQG GRMGRRRYND QEDDSIYKSK NLKAERKRRA KLSDRLLKLR  120
SLVPIITNMN KATIVEDSIT YIYELQKNVN MLQDQLFEME ALSSLEVPES KPRKEEIDAA  180
EEMKKYGIQV EVSVTQIDGN KLWIKAVLAK KRGGFTKLIE AMTEFGFELT DTSVTTSNGA  240
MLVSSCLIGF HCDTLAVEQT RELMLDIING I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-38bHLH family protein