PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0004471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 26823.3 Da PI: 6.549 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.6e-12 | 86 | 132 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + + +K +Ka+iL Av+ +++L RcHm_v2.0_Chr5g0004471 86 KACREKMRRDRLNDKFLELSTILEPG---RPPKTDKAAILVDAVRMVNQL 132 678**********************8...89***************9999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MAAPASSSSP PQNWVFDYDL IGNISVPGGD LPSLDPPGFS WGSDSFPAPT APSVDFDGSF 60 GNSEIMKETG SNKRARSGSC NVSGSKACRE KMRRDRLNDK FLELSTILEP GRPPKTDKAA 120 ILVDAVRMVN QLRGEAQNLK ESSESLQEKI TELKAEKNEL RDEKQRLKAE KENLERQIKA 180 LGTQPGFLPH PAAIPAPFSA PGQVVGGKLM PFMGYPGVSG YPGVSMWQFM PQAAVDTSQD 240 HVLRPPVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-87 | bHLH family protein |