PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0002121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 384aa MW: 42570.3 Da PI: 6.9335

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0002121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.5e-09	311	345	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ RcHm_v2.0_Chr5g0002121 311 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 345 569*****************************885 PP
2	ELK	41	3.9e-14	265	286	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ RcHm_v2.0_Chr5g0002121 265 ELKGQLLRKYSGYLGSLKQEFM 286 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MQGGSNGTNS MAFGDNSTNT NGGGGLFPMT MMMPLMTTNS QHHHGHHSLH SNNSPFLLLP 60 PNQNNHQQDQ TRNSSGGSSS FALDNHSNNP AAAAGCYFMD HNNNSGHGSS SSSSSSYIKS 120 KIMAHPHYHR LLAAYINCQK VGAPPEVVGR LEEACESATT IGQMVSSSSG STHGHGSLGE 180 DPALDQFMEA YCEMLIKYEQ EVSKPFKEAM LFLKKIESQF KTLTVSSASD SGCGEGGMDR 240 NNNGSSEEEV DVNNSLIDPQ AEDRELKGQL LRKYSGYLGS LKQEFMKKRK KGKLPKEARQ 300 QLLDWWSRHY KWPYPSESQK LALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFVVMDAS 360 HPTHYYMDNV LGNPFPMDIS PSLL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MQGGSNGTNS MAFGDNSTNT NGGGGLFPMT MMMPLMTTNS QHHHGHHSLH SNNSPFLLLP  60
PNQNNHQQDQ TRNSSGGSSS FALDNHSNNP AAAAGCYFMD HNNNSGHGSS SSSSSSYIKS  120
KIMAHPHYHR LLAAYINCQK VGAPPEVVGR LEEACESATT IGQMVSSSSG STHGHGSLGE  180
DPALDQFMEA YCEMLIKYEQ EVSKPFKEAM LFLKKIESQF KTLTVSSASD SGCGEGGMDR  240
NNNGSSEEEV DVNNSLIDPQ AEDRELKGQL LRKYSGYLGS LKQEFMKKRK KGKLPKEARQ  300
QLLDWWSRHY KWPYPSESQK LALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFVVMDAS  360
HPTHYYMDNV LGNPFPMDIS PSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	290	LKQEFMKKRK
2	287	291	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-140	TALE family protein