PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0000681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 691aa MW: 80349.2 Da PI: 6.059

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0000681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.3	9.1e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ RcHm_v2.0_Chr5g0000681 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPAKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNV 153 59******************8888.***************************************99867789***** PP FAR1 85 HnHela 90 HnHel RcHm_v2.0_Chr5g0000681 154 HNHELL 159 **96 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MNCMPSKNIW IRRQQCPCGD WKCYVTYEGD SEETSLAAQL VKNDTSTSEA MVSPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAK KKPTGEHHRD 120 RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQQR 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALITEKREN 240 DTLELLEACK VTKEADEDFV YDFTVDENDK VEHIAWSYGD SVHAYTMFGD AVYFDTMYQS 300 ITYGMLFGAW LGIDNHGRTI FFGCVLLQDE TPRSFSWALQ TFVRFMRGRW PQTIITDLDT 360 GLRDAITSEL PNTKHVISLW NILPKVSSWF SVSLGSRYAE FKSELDVLYR VESTEDFELQ 420 WNQMNLIYGL STDKHIALLH SFRASWALCY MRGCFVARMA TTDYSKSIEA FLKGVFSTQT 480 CLRSFFEQVG ISANFQNQAR REMQYMHTKT CIPIEEHARS ILTPFAFNAL QRELVLAMQY 540 AVSEMPNGSC IVRHFKEIDG ERLVIWIPED EQIHCSCKEF ESSGLLCRHL LRVFIVKNYF 600 QLPDKYYLNR WQRESSLDFY DPHITQNSDD QWYQDYQCLA ETLFTESSIT KERSEYVQRE 660 VTTHLTRILN EVRNMPESEG VAMDLTFSPA G

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MNCMPSKNIW IRRQQCPCGD WKCYVTYEGD SEETSLAAQL VKNDTSTSEA MVSPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAK KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQQR  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALITEKREN  240
DTLELLEACK VTKEADEDFV YDFTVDENDK VEHIAWSYGD SVHAYTMFGD AVYFDTMYQS  300
ITYGMLFGAW LGIDNHGRTI FFGCVLLQDE TPRSFSWALQ TFVRFMRGRW PQTIITDLDT  360
GLRDAITSEL PNTKHVISLW NILPKVSSWF SVSLGSRYAE FKSELDVLYR VESTEDFELQ  420
WNQMNLIYGL STDKHIALLH SFRASWALCY MRGCFVARMA TTDYSKSIEA FLKGVFSTQT  480
CLRSFFEQVG ISANFQNQAR REMQYMHTKT CIPIEEHARS ILTPFAFNAL QRELVLAMQY  540
AVSEMPNGSC IVRHFKEIDG ERLVIWIPED EQIHCSCKEF ESSGLLCRHL LRVFIVKNYF  600
QLPDKYYLNR WQRESSLDFY DPHITQNSDD QWYQDYQCLA ETLFTESSIT KERSEYVQRE  660
VTTHLTRILN EVRNMPESEG VAMDLTFSPA G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein