PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0000441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 722aa MW: 79871.1 Da PI: 5.6894

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0000441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.3	5.4e-11	672	720	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rW+ E++ l+ +v+++G g+Wk I t + Rt ++k++w++ RcHm_v2.0_Chr5g0000441 672 KRWSLHEEDTLKTGVQKYGRGNWKFILDTYRdvfEERTKVDLKDKWRNM 720 59******************************9**********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MIKGERVIFA IYFNPFPPNK TQFQVHFPRF ETLIPNLDHQ AQFFDQPVAV LMDLDVDVSR 60 WVLEFLFRDR EKESVAKRVL GVLPLSNHDW RLKKTLLLRT IESQILDEAS VTETLLESLE 120 SIEALDRGQG LPITHSMRAA YCAVATDCTV KFLAAFRGKP SGKYMEAVDR IWRGRVRILE 180 ESEGCELVSA ELKETRDEVE AAIWDIKVSK KLASLNTRND ALALVAAYVE EALGILGPPF 240 IAWAVRFNKH NGSLSSEADQ VAVESDGNAG DGCQVQVPMA NGAELDVQMA NGAVLDVQMG 300 NGVDLGDGSK LEVNGANVRE LEAQRGANVN SGSEQEAQRA NGPNVNSESE LEAQRVNGAN 360 DGSARSEQEL QRAKGANVSD ACEREAHDTN VGDESESQIV TVAYFNSRSE MGHYHTMNGV 420 QLQIVGAERL PPNGNHRVLS SEPATKEKET PRSTALRRRH GPVKIRDAED VDTEASAGIY 480 NSVSSAEVRK VQEELKSSVL ALQAVVTDPL PYALRKSEIV RSELGIRPVD HVSGENGGAA 540 NPSVAKCTEP DQFNNDNHGN HTSHQNDVSQ PSGKENDAPN LSVDKGKGTE YVQTGDVNPG 600 NPSCSFQNNV SRAGLMERNS TAHTYECDDS LGMSPEQTNS KGRLHLPSPK RNAVSPLKKY 660 EDKRSFKRRK VKRWSLHEED TLKTGVQKYG RGNWKFILDT YRDVFEERTK VDLKDKWRNM 720 TK

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MIKGERVIFA IYFNPFPPNK TQFQVHFPRF ETLIPNLDHQ AQFFDQPVAV LMDLDVDVSR  60
WVLEFLFRDR EKESVAKRVL GVLPLSNHDW RLKKTLLLRT IESQILDEAS VTETLLESLE  120
SIEALDRGQG LPITHSMRAA YCAVATDCTV KFLAAFRGKP SGKYMEAVDR IWRGRVRILE  180
ESEGCELVSA ELKETRDEVE AAIWDIKVSK KLASLNTRND ALALVAAYVE EALGILGPPF  240
IAWAVRFNKH NGSLSSEADQ VAVESDGNAG DGCQVQVPMA NGAELDVQMA NGAVLDVQMG  300
NGVDLGDGSK LEVNGANVRE LEAQRGANVN SGSEQEAQRA NGPNVNSESE LEAQRVNGAN  360
DGSARSEQEL QRAKGANVSD ACEREAHDTN VGDESESQIV TVAYFNSRSE MGHYHTMNGV  420
QLQIVGAERL PPNGNHRVLS SEPATKEKET PRSTALRRRH GPVKIRDAED VDTEASAGIY  480
NSVSSAEVRK VQEELKSSVL ALQAVVTDPL PYALRKSEIV RSELGIRPVD HVSGENGGAA  540
NPSVAKCTEP DQFNNDNHGN HTSHQNDVSQ PSGKENDAPN LSVDKGKGTE YVQTGDVNPG  600
NPSCSFQNNV SRAGLMERNS TAHTYECDDS LGMSPEQTNS KGRLHLPSPK RNAVSPLKKY  660
EDKRSFKRRK VKRWSLHEED TLKTGVQKYG RGNWKFILDT YRDVFEERTK VDLKDKWRNM  720
TK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	3e-13	MYB_related family protein