PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0447311
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 275aa    MW: 31712.3 Da    PI: 7.3062
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0447311genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10206254348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                             +WT+eE+e l ++ k++ ++ Wk+I          gRt  ++k++w++++
  RcHm_v2.0_Chr4g0447311 206 KWTKEEEEALRHGYKKYKTN-WKLILGDPAykacHGRTNVDLKDKWRNLM 254
                             8*****************99.***************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MLMVLLRQDM KPYLHCLQKK FQLCCFLFDS FHGDQGHSTW RPRPLNMATK AIMGSMSHNS  60
LHSLNMEDDE YSLNMEDDDN SMSLTGGIKK SVAFMEKFHE DLDAFYRLDD EERQLLIDLK  120
YLTLSPASQK PKEKDVVIVI SDDEEEKHVL MNLKYLASSS TSKKPEGADV VIGISDEEEK  180
MALQPSSPKK TLPMAGQTKE RRFHRKWTKE EEEALRHGYK KYKTNWKLIL GDPAYKACHG  240
RTNVDLKDKW RNLMRADDRA KAKACYSLPN GIDGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.13e-11MYB_related family protein