PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0446981
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 291aa    MW: 31180.7 Da    PI: 6.9669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0446981genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49e-101256446
                            S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                            WT e d+ + +a + ++ +   +W++Ia+ +  g+ l+++k+++  
  RcHm_v2.0_Chr4g0446981 12 WTWEQDKAFENALATYPEDapdRWDKIAADVE-GKNLEEIKHHYEL 56
                            ********************************.***********75 PP
2Myb_DNA-binding43.57.3e-14118162347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT++E+ +++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  RcHm_v2.0_Chr4g0446981 118 AWTEDEHRQFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 162
                             6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MSVDEAVASA LWTWEQDKAF ENALATYPED APDRWDKIAA DVEGKNLEEI KHHYELLLDD  60
VSQIEAGCIP LPCYNSSSEG STSHASDEGT SKKGHYSSES NHGSKASRAD QERRKGIAWT  120
EDEHRQFLLG LEKYGKGDWR SISRNFVVTR TPTQVASHAQ KYFIRLNSMN KDRRRSSIHD  180
ITSVNNGEIA AIQGPITGQG NGSAVGPSGS AKSTKQSAAG PPGVGMYGAP SIGQPIGGPL  240
VSAVGTPVNL AGHSPHMAYG VRAPMPPGAL VPGAPMNMPP MTYPMPHTAH R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-114MYB family protein