PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0445691

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 525aa MW: 57277.9 Da PI: 6.895

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0445691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00013	418	452	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +++ L++++ + +K + a++L +A++YIk Lq RcHm_v2.0_Chr4g0445691 418 VADKITALQQIVSPF-----GKTDTASVLYEAIQYIKFLQ 452 668999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MAAADQCRLD NTGNCVAISS STQPNWWDHD HLHAAAAAAA AGSHLSASSW PWHQHQHQQP 60 NPNSNSSCDE DVSMSSTSFT NASNHSSLSV DSSRRLVDQR SASPNDDMNN IGEQVSDNQI 120 WRQVLLSVGN NDLNSSMTHD VGENFLDALS SKNLSNTAMY EPACDYLKKL DNDSSNWEFT 180 NSSSAAATMH ASNLNNFERQ ININGSFSSE NLSNLVSTWS IAPPEPQVAN SPFFNLPQVS 240 CYGANNNLMK VESAAQLAGA NLHGRPFSSD NGSNIDYQIG HNNTMAADNS YYGSGNGLVM 300 PDSYSSSNSA RNFTDVISFN SRLGKPLMDH SHHAQKPSNF KSLINLSDNI SKKQGLQTSS 360 PTRMSGRGQG TANESAGKKK RTDESSTSSE IVLKKPKQET SAVNSSSSVK MQAPKVKVAD 420 KITALQQIVS PFGKTDTASV LYEAIQYIKF LQDQVQVLLS SPYLKTNPHK DPWGKLDQIR 480 GDHHPKVDLK SRGLCLVPTS CTPPVYRENT GSDYWTPTYR GCLYR

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MAAADQCRLD NTGNCVAISS STQPNWWDHD HLHAAAAAAA AGSHLSASSW PWHQHQHQQP  60
NPNSNSSCDE DVSMSSTSFT NASNHSSLSV DSSRRLVDQR SASPNDDMNN IGEQVSDNQI  120
WRQVLLSVGN NDLNSSMTHD VGENFLDALS SKNLSNTAMY EPACDYLKKL DNDSSNWEFT  180
NSSSAAATMH ASNLNNFERQ ININGSFSSE NLSNLVSTWS IAPPEPQVAN SPFFNLPQVS  240
CYGANNNLMK VESAAQLAGA NLHGRPFSSD NGSNIDYQIG HNNTMAADNS YYGSGNGLVM  300
PDSYSSSNSA RNFTDVISFN SRLGKPLMDH SHHAQKPSNF KSLINLSDNI SKKQGLQTSS  360
PTRMSGRGQG TANESAGKKK RTDESSTSSE IVLKKPKQET SAVNSSSSVK MQAPKVKVAD  420
KITALQQIVS PFGKTDTASV LYEAIQYIKF LQDQVQVLLS SPYLKTNPHK DPWGKLDQIR  480
GDHHPKVDLK SRGLCLVPTS CTPPVYRENT GSDYWTPTYR GCLYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	5e-50	bHLH family protein