PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0444961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 332aa    MW: 35840.2 Da    PI: 9.4591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0444961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-1394138347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  RcHm_v2.0_Chr4g0444961  94 AWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 138
                             7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MSRTCSQCGN NGHNSRTCTE AAGGGAAPAE NGIMLFGVRL VTEQGNPFRK SASMNNLSQY  60
DQLPLHDSNP DAGYASDDVV HASGNRRERK RGVAWTEEEH RLFLLGLQKV GKGDWRGISR  120
NFVKTRTPTQ VASHAQKYFL RRNNHNRRRR RSSLFDITTD TPSMNSLMEE DLALHHENSA  180
QLSLPVLPYP PPQSTSLSGN LIGGFPISTF PMALSPVVLP VTGESSSSAE SLALLGGAPN  240
PSNDVQQMAK VPPTTRKLVR PIPVHPVPPS AKMAELNLNH KYSPSRVAPE PLPLSLKLSN  300
TTSSEEESPT ASSHSSAFQA MSSGTDSIIS VA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.27e-73MYB_related family protein