PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0443741

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 487aa MW: 55167.1 Da PI: 7.6195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0443741	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	303	348	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +Er+RR ri+++ Lr l+Pk +K++ a+i + A++YIk+Lq RcHm_v2.0_Chr4g0443741 303 NLNAERKRRTRIKEGELALRALVPKI-----TKMDRASIPTDAIDYIKELQ 348 5568*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MATSVKRLER LMEEWLRPLV EAKQWDYCVV WKLGHDPSRF IEMVGCCCGG GYDYCANVKE 60 EEGVQLCRDG YLEHRIKTKA CEALAQLPDS MPLYSGVHTD VVISDQPRWI SNALESNHSE 120 SHDLNGTRVL IPVLLTGLIE LFTTKNMPEN QKMLDFLMES FNVALKKEVM TGHSCANVNL 180 KASATLDELH IDPMLEKSLQ NWFHSPNLPK LSPRPQIVTS RTQSTSCPSR EGSSSGSNPA 240 TEHPPFNLSS AQVPPHGCVK PSEKSSRFRK PKCCDNLLKQ QVVEKDNARG VRRTGSEHFR 300 SKNLNAERKR RTRIKEGELA LRALVPKITK MDRASIPTDA IDYIKELQQK VKELEDELRE 360 MEEEDSAKKE ADLQVSVLDK KKGGSNCLSS TDHKQISSFS QKSPTEVHLE VYQLSKKECL 420 IKLFCEHNRG GFTRLMETMD CLGLEVVDAN VTTFDRNSLI ILRVEANEDI QAKKLRNMLI 480 KLTRETN

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MATSVKRLER LMEEWLRPLV EAKQWDYCVV WKLGHDPSRF IEMVGCCCGG GYDYCANVKE  60
EEGVQLCRDG YLEHRIKTKA CEALAQLPDS MPLYSGVHTD VVISDQPRWI SNALESNHSE  120
SHDLNGTRVL IPVLLTGLIE LFTTKNMPEN QKMLDFLMES FNVALKKEVM TGHSCANVNL  180
KASATLDELH IDPMLEKSLQ NWFHSPNLPK LSPRPQIVTS RTQSTSCPSR EGSSSGSNPA  240
TEHPPFNLSS AQVPPHGCVK PSEKSSRFRK PKCCDNLLKQ QVVEKDNARG VRRTGSEHFR  300
SKNLNAERKR RTRIKEGELA LRALVPKITK MDRASIPTDA IDYIKELQQK VKELEDELRE  360
MEEEDSAKKE ADLQVSVLDK KKGGSNCLSS TDHKQISSFS QKSPTEVHLE VYQLSKKECL  420
IKLFCEHNRG GFTRLMETMD CLGLEVVDAN VTTFDRNSLI ILRVEANEDI QAKKLRNMLI  480
KLTRETN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-56	bHLH family protein