PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0441541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 279aa MW: 32246.9 Da PI: 6.2616

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0441541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.2e-19	37	98	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t+eq+ Leel+++ ++p+++++++ ++ l +++ ++V++WFqN+Ra+e++ RcHm_v2.0_Chr4g0441541 37 RNSRWNPTPEQIMHLEELYRSgIKTPTTQQIRQVTAGLrnygRVEGKNVFYWFQNHRARERQ 98 689***************99************************************97 PP
2	Wus_type_Homeobox	108.7	3.4e-35	38	100	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQi+ Leely+sG++tP++++i+++ta L++yG++e+kNVfyWFQN++aRerqk+ RcHm_v2.0_Chr4g0441541 38 NSRWNPTPEQIMHLEELYRSGIKTPTTQQIRQVTAGLRNYGRVEGKNVFYWFQNHRARERQKR 100 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MTQIPFFRHQ MVPVTLDEQG SDCFYSDKQP AAAAPPRNSR WNPTPEQIMH LEELYRSGIK 60 TPTTQQIRQV TAGLRNYGRV EGKNVFYWFQ NHRARERQKR RRELMSMYQS DSKQQQQQTL 120 TNNTISSLHD KESAGGDFVR CLEVEQQNRR TLPNLTVLSD QESSTVLQER MMSMVKSNSS 180 KLLVEQSDSP GSTSDTNASA TVIYTKLLDF HHYYDYGMVL TTPSIYKEFK EEEESRETQT 240 LELFPLESDN LKGAKDTKLP MSRTASTDTT SDFMADQYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01500.1	1e-26	WOX family protein