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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0440541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 433aa MW: 48891.4 Da PI: 9.2934 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.5e-16 | 80 | 139 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g RcHm_v2.0_Chr4g0440541 80 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 139 789******************988855556447*************************98 PP | |||||||
2 | AP2 | 54.6 | 2.7e-17 | 182 | 233 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+ +++g RcHm_v2.0_Chr4g0440541 182 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 233 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence |
MDQLASSVKS ELVTSPSKRP ICMIEVDALV NKCVKRRRRD SSTAVSPAGH NADQQQQTQP 60 NHPSSTTTTT TTTTTVKRSS RFRGVSRHRW TGRYEAHLWD KGSWNPTQRK KGKQVYLGAY 120 DEEESAARAY DLAALKYWGT STFTNFPVSD YENEIDLMNT LTKEEYLASL RRRSSGFSRG 180 VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYGTQEEA AHAYDIAAIE YRGINAVTNF 240 DLSTYIRWLR PGPSSLVANS QEQPKPNIAD SNSNNPSKEE RPMSIFNPNY SFAVEEIDTT 300 RTRGIFQRQN TMPPISPTCT PKSSNSPTAL SLLLKSSIFK ELVEKNLNDE TEESDDEKSD 360 IIKNLLPQTN GTENLKRILY EGIHNIPFSC SSNRDMLPAL ESREKNMLPL CNSRGQSLWN 420 NGAINMFSSA DFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 114 | PTQRKKGKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-78 | AP2 family protein |