PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0440541
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 433aa    MW: 48891.4 Da    PI: 9.2934
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0440541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.5e-1680139155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  RcHm_v2.0_Chr4g0440541  80 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 139
                             789******************988855556447*************************98 PP

2AP254.62.7e-17182233155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  RcHm_v2.0_Chr4g0440541 182 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 233
                             89****99**********99966...3.6*************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MDQLASSVKS ELVTSPSKRP ICMIEVDALV NKCVKRRRRD SSTAVSPAGH NADQQQQTQP  60
NHPSSTTTTT TTTTTVKRSS RFRGVSRHRW TGRYEAHLWD KGSWNPTQRK KGKQVYLGAY  120
DEEESAARAY DLAALKYWGT STFTNFPVSD YENEIDLMNT LTKEEYLASL RRRSSGFSRG  180
VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYGTQEEA AHAYDIAAIE YRGINAVTNF  240
DLSTYIRWLR PGPSSLVANS QEQPKPNIAD SNSNNPSKEE RPMSIFNPNY SFAVEEIDTT  300
RTRGIFQRQN TMPPISPTCT PKSSNSPTAL SLLLKSSIFK ELVEKNLNDE TEESDDEKSD  360
IIKNLLPQTN GTENLKRILY EGIHNIPFSC SSNRDMLPAL ESREKNMLPL CNSRGQSLWN  420
NGAINMFSSA DFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114PTQRKKGKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-78AP2 family protein