PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0439571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 405aa    MW: 44926.3 Da    PI: 6.9955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0439571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-16149194147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  RcHm_v2.0_Chr4g0439571 149 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 194
                             899*****************************.***********996 PP
2Myb_DNA-binding55.71.2e-17201244146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  RcHm_v2.0_Chr4g0439571 201 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 244
                             678*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MKGMMANHNA SAINATENPN ALSCFPSSSS SSSSSSPGFS MGMVYADMGS LSLSASNYDL  60
VSSHESSYYN TSNSNLSHNH EVENGNTPYF WGFPPSLGTR SAEEHHGHHN NSDFRGGGKA  120
CSDSMSDDGT EEHNESMNHK NGQSKLCARG HWRPAEDSKL KELVALYGPQ NWNLIAEKLE  180
GRSGKSCRLR WFNQLDPRIN RRAFSEEEEE RLMQAHRIYG NKWAMIARLF PGRTDNAVKN  240
HWHVIMARKY REQSSAYRRR KLSQSVYRAS SMEENMNSAP PAVPYSYLNN YGSSGNSHNM  300
ASWEEAAIIT NEKVPPPFQF LPGTNDEAGQ ISSGNFYDHP PYMMNVMAMR QSNYYHTLQS  360
YSDSTSASPS LVSAGGKLSS TSSAGDQERR DIAPSFIDFL GVGAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-77MYB family protein