PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0439371

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 411aa MW: 45350.9 Da PI: 7.0191

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0439371	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl RcHm_v2.0_Chr4g0439371 14 KGPWTPEEDQKLLSYIQEYGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53	7.9e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l RcHm_v2.0_Chr4g0439371 67 RGKFSLQEEQTIIQLHALLGNR-WSAIANHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLSYIQ EYGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIANHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPATHKPKH HEAYGSGSGH AKDAANLSHM AQWESARLEA EARLVRESKQ LIMTNHPLQF 180 QHHQLVNISP STQTHGLLMS KASAATSALP CLDVLKAWQG AWSSKPIILD NNSSNNTIVS 240 GMNLMMAMDD LESPTSTLNF PAAYNNAAYP MQSLNANKQL PQFKQEVTNT MVLQDIHAYN 300 GCTDASTTTT NAWFNEDVMI RTSGGNDDVN NVMLPAAAAA LSNIMEGFCG GTTADMLVYN 360 SDEQNMAAGE ISDTGGDESC GRSDNNVEEN RSYWDSILNL VNASPSGSPV F

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLSYIQ EYGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIANHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPATHKPKH HEAYGSGSGH AKDAANLSHM AQWESARLEA EARLVRESKQ LIMTNHPLQF  180
QHHQLVNISP STQTHGLLMS KASAATSALP CLDVLKAWQG AWSSKPIILD NNSSNNTIVS  240
GMNLMMAMDD LESPTSTLNF PAAYNNAAYP MQSLNANKQL PQFKQEVTNT MVLQDIHAYN  300
GCTDASTTTT NAWFNEDVMI RTSGGNDDVN NVMLPAAAAA LSNIMEGFCG GTTADMLVYN  360
SDEQNMAAGE ISDTGGDESC GRSDNNVEEN RSYWDSILNL VNASPSGSPV F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-112	MYB family protein