PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0439191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 280aa MW: 32212.8 Da PI: 8.7328 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.6 | 4.6e-18 | 25 | 107 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +vl +g l +p++f+e+++gk ++ + +l+++sg +W v + ++ sg+++l+kGWkeFv an+Lk g+ vvF ++g+ +f +v RcHm_v2.0_Chr4g0439191 25 SVLLKGKLKIPRDFCENFEGKMPQ--QCRLQTLSG-TWHVDV--KNISGEFFLKKGWKEFVVANRLKLGECVVFDYIGHAKF--YVE 104 6777899********999999655..699999887.8*****..*********************************98777..888 PP EE- CS B3 96 vfr 98 ++ RcHm_v2.0_Chr4g0439191 105 IYG 107 875 PP | |||||||
2 | B3 | 38 | 2.8e-12 | 189 | 275 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 ++ + +v+k l p++f++++ ++ + +++l+ W+v+ i+ ++++ +++GW +F+++n+L+egDf+ F+l+ ++ RcHm_v2.0_Chr4g0439191 189 VKMCQTHVTKGP-LLTPRSFMRNIHKP--K--KVKLQV-GDMAWDVNWIH-PYQQSSRFSGGWLHFASQNRLQEGDFCDFELIsKTi 268 566677777777.555*****888644..4..566554.55899999965.55555569**********************993445 PP SEE..EE CS B3 88 sefelvv 94 + + ++v RcHm_v2.0_Chr4g0439191 269 EVAVMKV 275 5554444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence |
MGSCSRRRED EDSEFPGFYK CVDYSVLLKG KLKIPRDFCE NFEGKMPQQC RLQTLSGTWH 60 VDVKNISGEF FLKKGWKEFV VANRLKLGEC VVFDYIGHAK FYVEIYGHNH CSKSSKAMRS 120 ERLLDDDSDD HNVVFVYSDS DSEPRNSEIS LESETECPRK SGYGKILSRR GRAGNSATIR 180 CFGNPCFSVK MCQTHVTKGP LLTPRSFMRN IHKPKKVKLQ VGDMAWDVNW IHPYQQSSRF 240 SGGWLHFASQ NRLQEGDFCD FELISKTIEV AVMKVSIRKM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 4e-12 | B3 family protein |