PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0435901

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 353aa MW: 39135.9 Da PI: 6.5739

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0435901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	169	215	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L RcHm_v2.0_Chr4g0435901 169 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 215 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MCGKKEDQGE CSQSHHHQQV QNFQEQLLLQ QQQQMMQQQQ QNHNELYGRG LISPHDQAPP 60 PILQPWTLPP IHAFNPAHFP VRGDNNIDPF LVPPPAPSSS YASFFNRRGA PSLQFTYDGS 120 SSDHHHLRIL SEALGPMVQP GSAPFGLQAE LGKLTAQEIM DAKALAASKS HSEAERRRRE 180 RINNHLAKLR SLLPSTTKTD KASLLAEVIQ HVKELKRQTS VIAETSPVPT ETDELIVDDA 240 SDEEGKFVIK ASLCCEDRSD LLPDLIKTLK ALRLRTLKAE ITTLGGRVKN VLFITGEEDS 300 SSSEEQQQQQ YCISSIQEAL KAVMEKSGGG DDSNSSGSVK RQRTTNNTNI NIL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MCGKKEDQGE CSQSHHHQQV QNFQEQLLLQ QQQQMMQQQQ QNHNELYGRG LISPHDQAPP  60
PILQPWTLPP IHAFNPAHFP VRGDNNIDPF LVPPPAPSSS YASFFNRRGA PSLQFTYDGS  120
SSDHHHLRIL SEALGPMVQP GSAPFGLQAE LGKLTAQEIM DAKALAASKS HSEAERRRRE  180
RINNHLAKLR SLLPSTTKTD KASLLAEVIQ HVKELKRQTS VIAETSPVPT ETDELIVDDA  240
SDEEGKFVIK ASLCCEDRSD LLPDLIKTLK ALRLRTLKAE ITTLGGRVKN VLFITGEEDS  300
SSSEEQQQQQ YCISSIQEAL KAVMEKSGGG DDSNSSGSVK RQRTTNNTNI NIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	180	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	5e-81	bHLH family protein