PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0434891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33868.9 Da PI: 6.0898 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 8.9e-18 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl RcHm_v2.0_Chr4g0434891 21 KGPWTLDEDTLLIHYIANHGEGHWNALAKCAGLKRTGKSCRLRWLNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++++++++G++ W++Ia++++ gRt++++k++w++ RcHm_v2.0_Chr4g0434891 74 RGNLTPQEQLLILELHAKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MAGVANSVYT CPNEEENEMR KGPWTLDEDT LLIHYIANHG EGHWNALAKC AGLKRTGKSC 60 RLRWLNYLKP DIKRGNLTPQ EQLLILELHA KWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ 120 KQARQLNIES DSKRFLDAVR CFWMPTLRQK MEQTSSLSLD PPSSSSSHSN YLTSQISIAP 180 SLSTSTQTCS VPSSPPSKVV SHVSDYSPIG TSSPSHNSLS SDSLISQLPQ ITEQPASSSY 240 AFEALNDNYY MDYDMEGFSL DPVSEMVSFD TSQFDCQMAE SYWIPSNYMT DTLWNMQGM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 2e-83 | MYB family protein |