PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0433571

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 321aa MW: 36802.5 Da PI: 4.8481

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0433571	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.4e-09	264	298	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+++gL++rq+ +WF N+R ++ RcHm_v2.0_Chr4g0433571 264 KWPYPTEADKIALAESTGLDQRQINNWFINQRKRH 298 569*****************************885 PP
2	ELK	23.6	1.2e-08	218	239	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++L rK+++++g+Lk EFs RcHm_v2.0_Chr4g0433571 218 DLKNRLFRKFGSHIGTLKLEFS 239 69*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MEEMYGLQSA VDYGDKSTDY ADKALMTPEN LILPMDYQSL LSSVAFRDHR VPMMFGSDAG 60 DLYSAISSVP EFRRGEEDVF GPIKAKIASH PSYPRLIEAY IDCQKVGAPP EIASFLEEIR 120 RENDLYKRER DAAMSTCLGA DPELDEFMET YCDMLVKYKS DLARPFDEAT TFLNKIETQL 180 SNLCIRTLSD EGAVSSEEEF SGGELEVQEA QARGEDRDLK NRLFRKFGSH IGTLKLEFSK 240 KKKKGKLPKE ARQALLHWWS VHYKWPYPTE ADKIALAEST GLDQRQINNW FINQRKRHWR 300 PSENMQFAVM DNLSGPFFAD D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	1e-127	TALE family protein