PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0431941
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 590aa    MW: 66245.8 Da    PI: 5.8501
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0431941genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.14.7e-24199252155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  RcHm_v2.0_Chr4g0431941 199 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252
                             68*******************.9*******************************8 PP
2Myb_DNA-binding39.51.3e-12201251148
                             TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r  W+ ++++++v+av+q G +   +k+I   m+   +t++++ s++qky+
  RcHm_v2.0_Chr4g0431941 201 RVVWSVDLHQKFVKAVHQIGFDkvGPKKILDLMNvPWLTRENVASHLQKYR 251
                             678***********************************************7 PP
3Response_reg80.36.2e-27191271109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+vdD+p+ +++l+++l+k  y ev+++  +++al ll+ek+  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + 
  RcHm_v2.0_Chr4g0431941  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALYLLREKKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSR 103
                             89*********************.***************999999**********************6644.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + ++ Ga d+l Kp+ ++el++
  RcHm_v2.0_Chr4g0431941 104 VMKGVQHGACDYLLKPIRMKELRN 127
                             *********************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    
MESSFSSPRN DSFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCGLAR DALYLLREKK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKIHEI RDIEGHESID GIQLTRNGSD LYDDGYFLGA DDLISSRKRK  180
DIENKYDDKD FGDSSSTKKA RVVWSVDLHQ KFVKAVHQIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQKY RLYLSRLQKE NDLKSSFGGM KHSDYATKDP QGIFGVQNSI SIPQNDVTNG  300
SYRFSGNSLV APTVVDPKRL EDDVKGIIPE PVAEPKTRSS QVDLSHSYAE TKKGLIGNVA  360
DSLKIRSSQM GVNHSFASVE SEINFTIPTK YSWIEAQMKQ EHKPVVQLDN GFNKPQPPGV  420
QHHLQADLLQ PIPSISPRPS ILDEETNRPI KNKPSQAAYR NSHISHVSPT ITAADSFSEQ  480
TKSCVVDQGF DPSSGSLSNM KNQGFNLSYL TNFEPGQKNL FFGSGSSFAS LDDELQICLC  540
PADYFGMNLE VSEYNDAEVP AHLYEAMRFG CEYPCESSEY SLADQSLFIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-131ARR-B family protein