PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0430411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 118aa MW: 13225 Da PI: 9.8765 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 23.8 | 9.2e-08 | 1 | 69 | 30 | 97 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivp 97 +k d d+++i +ea l+s + +lf+ l+ s a e+kr+ +k i +a +r + dfl+d+ p RcHm_v2.0_Chr4g0430411 1 MKLDRDINKINSEALHLVSCSAQLFLQFLAEASGEAAMEKKRKIVKLEHIRTAAKRHrATRDFLLDELP 69 9*************************************************99988762688*****987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence |
MKLDRDINKI NSEALHLVSC SAQLFLQFLA EASGEAAMEK KRKIVKLEHI RTAAKRHRAT 60 RDFLLDELPV PSQPSDQKSA DRSRSRPVAD NPAPAGTRRI DDFFSKPATK SPIEVEES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 5e-39 | NF-YC family protein |