PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0429371

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 477aa MW: 51636.5 Da PI: 5.9842

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0429371	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.5e-07	13	44	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e+++ l+C+ ++ lC C ++ H g RcHm_v2.0_Chr4g0429371 13 IPCDFCSEQPAVLYCKADSAKLCLFCDQHVH-G 44 57**************************999.4 PP
2	zf-B_box	21.2	6e-07	55	100	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ + + + C +++ lC++C H + H+++p+ RcHm_v2.0_Chr4g0429371 55 SQICDNCASDAVAFRCSTDNLVLCHECDWDAHGScsvsaaHDRTPI 100 689****99***************999954889999988876 PP
3	CCT	64.3	3.6e-22	429	472	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk++ RcHm_v2.0_Chr4g0429371 429 RGNAMLRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKAT 472 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MVSSKPATAG ESIPCDFCSE QPAVLYCKAD SAKLCLFCDQ HVHGANLLSR KHVRSQICDN 60 CASDAVAFRC STDNLVLCHE CDWDAHGSCS VSAAHDRTPI EGFSGCPSPL ELAALWGLDL 120 HKNTPGRVGG GGDPVDPTRN WELESSWSGV NFQDLIVPSQ NGEVYRNCGE VAPAKRQGSG 180 GSLGKYKQGI QKQLVELLKR DFDGGGENLE PAAAAEGNDN ASNNVNVNVN VNAEGFDVEN 240 GRVDGVNVGS VAVSQPLLQQ QAPFTSLLMM AGGIVDRDML WDTNPHGHNT QGTQIWDFNL 300 GKSRDHEETV PLDVPYGSGG SGFMIKNFSE LLKEASLTDT KMYGDMYQMN CPIGQDDIKF 360 NINSNNPAVS QGPATSESNN ISIGRPSSGS AFGEDKGNIA TTEGPFLIRS DSLRTTGTKA 420 DMELLAQNRG NAMLRYKEKK KNRRYDKHIR YESRKARADT RKRVKGRFVK ATEAPDG

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MVSSKPATAG ESIPCDFCSE QPAVLYCKAD SAKLCLFCDQ HVHGANLLSR KHVRSQICDN  60
CASDAVAFRC STDNLVLCHE CDWDAHGSCS VSAAHDRTPI EGFSGCPSPL ELAALWGLDL  120
HKNTPGRVGG GGDPVDPTRN WELESSWSGV NFQDLIVPSQ NGEVYRNCGE VAPAKRQGSG  180
GSLGKYKQGI QKQLVELLKR DFDGGGENLE PAAAAEGNDN ASNNVNVNVN VNAEGFDVEN  240
GRVDGVNVGS VAVSQPLLQQ QAPFTSLLMM AGGIVDRDML WDTNPHGHNT QGTQIWDFNL  300
GKSRDHEETV PLDVPYGSGG SGFMIKNFSE LLKEASLTDT KMYGDMYQMN CPIGQDDIKF  360
NINSNNPAVS QGPATSESNN ISIGRPSSGS AFGEDKGNIA TTEGPFLIRS DSLRTTGTKA  420
DMELLAQNRG NAMLRYKEKK KNRRYDKHIR YESRKARADT RKRVKGRFVK ATEAPDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-107	CO-like family protein