PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0429161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 185aa MW: 20481.6 Da PI: 6.0201 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.7e-10 | 38 | 85 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i+ ++ L++l+P + +k Ka iL + ++Y++ Lq RcHm_v2.0_Chr4g0429161 38 SHSLAERARRAQIRMRMKLLQSLVPGC----DKITGKAHILDEIIKYVQLLQ 85 8*************************9....899***************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MEHQLKELMG KRSRLSAEGV ATEDYVRVKA RRGEATDSHS LAERARRAQI RMRMKLLQSL 60 VPGCDKITGK AHILDEIIKY VQLLQNQVES LAAKLAFVDL MLYDCEPNPS GNACVPEGLL 120 PSVPESSSIP FMSFADGGVS HSASLLLKED QIATLIPQYG RDLLLDLEEQ PEAIRQLMHL 180 LSSAN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 4e-34 | bHLH family protein |