PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0426181

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 343aa MW: 38359.3 Da PI: 6.6784

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0426181	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.2e-17	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl RcHm_v2.0_Chr4g0426181 29 RGPWTVEEDVALMNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 76 89********************************************97 PP
2	Myb_DNA-binding	51.1	3e-16	82	125	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ RcHm_v2.0_Chr4g0426181 82 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 125 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MDVKPGRVSD IIRNSSEEDE DAMMMDLRRG PWTVEEDVAL MNYIANHGEG RWNSLARCAG 60 LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ LLILELHSRW GNRWSKIAQH LPGRTDNEIK 120 NYWRTRVQKH AKQLKCDVNS KQFKDTMRYL WMPRLVERIQ AAASAATAPT GASSSITTAA 180 ANTYHFNNNN NSFQAPAGAA HVALQQATLI GNNNDLAGSY TTPENSSTAA SSDSFGTQVS 240 PVSELTDYYS NMSVNNNKPS SQALDYFQAT NPHHQVGYHD SMTSPSGYSF NQGGLNSHSF 300 QAASAPEQNN NGQWGMDGGD FSDNLWNVEE SDMWFLQQQL GNI

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MDVKPGRVSD IIRNSSEEDE DAMMMDLRRG PWTVEEDVAL MNYIANHGEG RWNSLARCAG  60
LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ LLILELHSRW GNRWSKIAQH LPGRTDNEIK  120
NYWRTRVQKH AKQLKCDVNS KQFKDTMRYL WMPRLVERIQ AAASAATAPT GASSSITTAA  180
ANTYHFNNNN NSFQAPAGAA HVALQQATLI GNNNDLAGSY TTPENSSTAA SSDSFGTQVS  240
PVSELTDYYS NMSVNNNKPS SQALDYFQAT NPHHQVGYHD SMTSPSGYSF NQGGLNSHSF  300
QAASAPEQNN NGQWGMDGGD FSDNLWNVEE SDMWFLQQQL GNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06490.1	4e-92	MYB family protein