PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0424281

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 720aa MW: 82336.7 Da PI: 7.1072

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0424281	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.2	1.8e-20	45	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 +fY+ +Ak++GFs+r+++++ + + +t+r+f+C + g+++ + ++ k +r+r+++r+gC+a +++ k+ +w++t +++ RcHm_v2.0_Chr4g0424281 45 EFYCGFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPAEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSN 131 6*************9998874556679***************9***************98887676789**** PP FAR1 84 eHnHela 90 HnHel RcHm_v2.0_Chr4g0424281 132 VHNHELL 138 ***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MDDLSQDDTG TIEEMAEDSI LSRQTSVNLV PFVGQRFVSQ DAAYEFYCGF AKQCGFSIRR 60 HRTRGKDGVG RGVTRRDFTC HRGGYPQMKP AEDGKMQRNR KSSRCGCQAY MRIVKRADFD 120 VPEWRITGFS NVHNHELLKS NEVSLLPAYC SISPDDKSRI CMYAKAGMSV RQMLRLLELE 180 KGVKLGCLTF TEIDVRNLLQ SFRNVNRDND AIDLIAMCKK MKDENPHFKY DFKIDGHNRL 240 EHIAWSYGSS IQLYEEFGDA VVFDTTYRLD AYDMLLGIWL GVDNHGMTCF FGCVLLRDEN 300 MQSFFWALKT FWGFMKGKTP QTILTDHNMW LKEAIAVVMP QTRHAFCIWY IVEKFSEWFS 360 PLLGSQYDDW KADFDQLYNL QSVEDFEERW TEMVDRYGLR ANKHVISLYA LRSFWALAYM 420 RPYFFAGMTS TCHSDSINAF IQRFLSAVSQ LDRFVEQAAD IVNYSDRAGA KQKLQQKLQR 480 VCLKTGSPIE SHAASVLTPH AFGKLQEELV LAPQYASLPV DESFFQVRHH TQADGGCKVI 540 WVPSQEHISC SCCEFEFTGI LCRHILRVLS NNNCFRIPDQ YLPIRWCGVS SSSTNTFQTA 600 KDKSEKIQLL ESMASTLVAE SVETEERLDV AYEQIAVVLS RVKDIPSTTR KANVGASNCP 660 PDLMTLPEVE VDNGDVRFTI GNSHESVSSG KLKERRPKET VESNRKRTRH CAGPCCLSVQ

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MDDLSQDDTG TIEEMAEDSI LSRQTSVNLV PFVGQRFVSQ DAAYEFYCGF AKQCGFSIRR  60
HRTRGKDGVG RGVTRRDFTC HRGGYPQMKP AEDGKMQRNR KSSRCGCQAY MRIVKRADFD  120
VPEWRITGFS NVHNHELLKS NEVSLLPAYC SISPDDKSRI CMYAKAGMSV RQMLRLLELE  180
KGVKLGCLTF TEIDVRNLLQ SFRNVNRDND AIDLIAMCKK MKDENPHFKY DFKIDGHNRL  240
EHIAWSYGSS IQLYEEFGDA VVFDTTYRLD AYDMLLGIWL GVDNHGMTCF FGCVLLRDEN  300
MQSFFWALKT FWGFMKGKTP QTILTDHNMW LKEAIAVVMP QTRHAFCIWY IVEKFSEWFS  360
PLLGSQYDDW KADFDQLYNL QSVEDFEERW TEMVDRYGLR ANKHVISLYA LRSFWALAYM  420
RPYFFAGMTS TCHSDSINAF IQRFLSAVSQ LDRFVEQAAD IVNYSDRAGA KQKLQQKLQR  480
VCLKTGSPIE SHAASVLTPH AFGKLQEELV LAPQYASLPV DESFFQVRHH TQADGGCKVI  540
WVPSQEHISC SCCEFEFTGI LCRHILRVLS NNNCFRIPDQ YLPIRWCGVS SSSTNTFQTA  600
KDKSEKIQLL ESMASTLVAE SVETEERLDV AYEQIAVVLS RVKDIPSTTR KANVGASNCP  660
PDLMTLPEVE VDNGDVRFTI GNSHESVSSG KLKERRPKET VESNRKRTRH CAGPCCLSVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein