PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0424211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 676aa    MW: 73714.4 Da    PI: 6.5478
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0424211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.51.4e-28213266155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  RcHm_v2.0_Chr4g0424211 213 KPRVVWSVELHQQFVGAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
                             79*******************.********************************8 PP
2Myb_DNA-binding39.41.4e-12215265148
                             TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r  W+ e+++++v av+qlG +   +k+I + m+  g+t++++ s++qky+
  RcHm_v2.0_Chr4g0424211 215 RVVWSVELHQQFVGAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 265
                             678***********************************************7 PP
3Response_reg77.74e-26351431109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+vdD+p+ +++l+++l+   y ev+ +  +e al ll+e++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a + ++ 
  RcHm_v2.0_Chr4g0424211  35 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAEIALSLLRENKngYDVVISDVHMPDMDGFKLLEQIGLEM-DLPVIMMSADDGKSV 119
                             89*********************.***************999999**********************6654.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + +  Ga d+l Kp+ +e+l +
  RcHm_v2.0_Chr4g0424211 120 VMKGVTHGACDYLIKPVRIEALKN 143
                             ********************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    
MNLNNGRGSM STASSSGAWK SGDVVPDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT  60
KCNRAEIALS LLRENKNGYD VVISDVHMPD MDGFKLLEQI GLEMDLPVIM MSADDGKSVV  120
MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KKKNEWKDVE QSGSVDEGDR QQKPCEEPDY  180
SSSANEGTWK NSKKRKDEDD DAEDRDDTST LKKPRVVWSV ELHQQFVGAV NQLGIDKAVP  240
KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQSN LNNSFISSQD ASFGAMSSLN  300
GIDLQTLAAT GQLPAQSLAT LQAAGLGRST AKSGIPMPLV DQRNLFSFEN PKLRFAEGQQ  360
HHSSGKPMNL LHGIPTTMEA KQLANLHQSA QSLGPVNMQV NAHGVQNNSL YMIGQPQSRG  420
QILNESSGTH VPRLPSSIGQ PMVSNGIPSG VIGRNGISDV GRGTGYNPVP QNSSMLNFPL  480
NNTPELPGNS YTLGSTQGMS SLTPKGSFPD EVNSEIKRSG GFVPSYDIFN ELHQHKSNDW  540
NLQNVGLTFD ASHHANSIHG SLDSSGLVHQ GFSSNQRSAQ SRNPSNVGKA MFPMGAASTD  600
HGHAQNSGQH LSNGLIVDNP VRIKSERHSD ASQNNFFHDQ YGQEDLMSAL LKQQGGVGPS  660
ENEFDFDGYS LDNIPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.20.0ARR-B family protein