PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0419141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 783aa MW: 90093.8 Da PI: 7.5063 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.9 | 2.2e-20 | 66 | 141 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY YA ++GF+vr+ + ++s+++g++ r+fvCskeg++++ trtgC a ++v+++++gkw+++ + ++HnH RcHm_v2.0_Chr4g0419141 66 EFYTLYAARTGFKVRIGQLYRSRTDGTVSARRFVCSKEGFQTS--------------TRTGCAALIRVQRRDSGKWVIDLFLKNHNH 138 6***************************************876..............79**************************** PP FAR1 88 ela 90 +l RcHm_v2.0_Chr4g0419141 139 DLG 141 995 PP | |||||||
2 | FAR1 | 67.3 | 4e-21 | 218 | 293 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY++YA+++GF++r+ + +sk +g+it+r+fvCs+eg++++ +r+gC a +++k++++g+w+v++le++HnH RcHm_v2.0_Chr4g0419141 218 QFYHAYAENAGFRIRIGQLFRSKLDGSITSRRFVCSREGFQHP--------------SRVGCGAFMRIKRQESGRWVVDRLEKHHNH 290 6***************************************999..............4899************************** PP FAR1 88 ela 90 el RcHm_v2.0_Chr4g0419141 291 ELE 293 *96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence |
MESSSTHFTD IRSSDTDSKI EECVNNAYPL RMLMPAMNIG STDDEGESIL EPYVGLAFDS 60 ADGAREFYTL YAARTGFKVR IGQLYRSRTD GTVSARRFVC SKEGFQTSTR TGCAALIRVQ 120 RRDSGKWVID LFLKNHNHDL GPTEGNHSLI LQQKILTAKP VEVFHRPKNK LIEEVEDGRP 180 CPSGVITAKR SKPNGDEMQC EVQPSAGLGF NSANEAYQFY HAYAENAGFR IRIGQLFRSK 240 LDGSITSRRF VCSREGFQHP SRVGCGAFMR IKRQESGRWV VDRLEKHHNH ELESRHEVQK 300 KNLSASKKFI EEENGGLDDE DIVDINNGNL VKRRRENHIG SDWYTVLFDY FQTKQAEDTG 360 FFYAVEVDSG SCMSIFWADG RSRFSCSQFG DAIIFDTSYR KGIYLVPFAT FIGINHNRQP 420 VLLGCALIAD ESEMSFTWLF QTWLRAMSGR RPVSIIADQD NAIQEAIIQV FPGTHHRFSM 480 WQIKAKECEH LSSVHSSFHF EYGKCINQSQ TSDEFDTAWN SLLCRYGLKD NTWLKAMYEK 540 RQCWVPLFLR ATFFAGIPLN GNIESFFGTH VNAQTPLTEF VPRYEKGLER RREEELKENF 600 NCSILNAYLQ TKEPVEEQCR RLYTLNIFRI FQKELLQSYS YLGFKIDEEV DIVRYLVRKC 660 GNGDDDKSTV TIRVSNHNVG CSCQMFEFEG VLCRHVLRVF QILEIKEVPS RYILRRWRKN 720 AEYGLPPYSE SGGRPQEVNA SMVWSLREEA WKYIEAGATS LEKHRLAYEI LHEGRLRLGC 780 PPR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 0.0 | FAR1 family protein |