PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0418301
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 202aa    MW: 22556.2 Da    PI: 8.9739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0418301genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86e-11249454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   ++e+Ik+L
  RcHm_v2.0_Chr4g0418301  2 SHIAVERNRRKQMNEHLKVLRSLTPCF---YIKRGDQASIIGGVIEFIKEL 49
                            89************************9...9******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MSHIAVERNR RKQMNEHLKV LRSLTPCFYI KRGDQASIIG GVIEFIKELH QVLQSLESNK  60
RRRKSLSPSP NPSPSQPLLL LPPPALPQLD QSPKFNFGLI DQNHDRAVKE LGACCNSPVA  120
DVEAKISGSN VVLKIISRRI PGQVVKIISV LERSSFEVLH LNISSMEDTV LYSFVIKIGL  180
ECQLSVEDLV LEVQQSLRSD TA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.19e-83bHLH family protein