PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0417851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28861.6 Da PI: 6.3414 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.4 | 1.4e-55 | 79 | 182 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql++fw+ q ie+a+dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t RcHm_v2.0_Chr4g0417851 79 QLQNFWSGQyqeIEQANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 165 89****988888*************************************************************************** PP NF-YC 85 rtdifdflvdivprdel 101 rtdifdflvdivpr++l RcHm_v2.0_Chr4g0417851 166 RTDIFDFLVDIVPREDL 182 **************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MDQQGHGHPT TMGVPGAGQA SYGVNPYQPS QMMGLSPTGS VGMMQSPTQP GGPSAPSQLA 60 QHQAYQHIHQ QQQQQLQQQL QNFWSGQYQE IEQANDFKNH SLPLARIKKI MKADEDVRMI 120 SAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE 180 DLKDEVLASI PRGGNVPVVG PADGLPYYYM PAQHPPQVGA PGMMVGKPVM DQNMYGQPTH 240 PYMAQPAWPQ QQQPHKDSE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 158 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 4e-80 | NF-YC family protein |