PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0415891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 91aa    MW: 11108 Da    PI: 10.4224
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0415891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-15552148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd ll +++++ G g+W++I+   g++R++k+c+ rw++yl
  RcHm_v2.0_Chr4g0415891  5 KGAWTKEEDHLLRKCIEKRGEGRWHKIPLQAGLKRCRKSCRMRWLNYL 52
                            79*********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    
MELRKGAWTK EEDHLLRKCI EKRGEGRWHK IPLQAGLKRC RKSCRMRWLN YLKPTIKRGE  60
FEDDEVDLMI KLYKLLGNRQ GLHTTYRFLY N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-38MYB family protein