PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0415421

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 446aa MW: 49859.6 Da PI: 5.3132

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0415421	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.6e-12	224	275	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A++++++L+ RcHm_v2.0_Chr4g0415421 224 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIDFVRELE 275 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MEKEENNYSA AFLPTNFNGL DYTLDHHHDE DQQQQQMNSS HVDLTSSSHE NNNNGMINYL 60 MNDHHHDQLQ LQHQQPQQTQ HPPPAGFSGA STTSFDKLSF ADVMQFADFG PKLALNQTKI 120 SEEESGIDPV YFLKFPVLND KLDDDDDQSL MLPRQDGPDS HQEERFTKSG EEEETRGVSG 180 STNSVQLRFL GDGVPNPRGG LPELPKNKRK RPRSTKTSQE VESQRMTHIA VERNRRKQMN 240 EHLRVLRSLM PGSYVQRGDQ ASIIGGAIDF VRELEQLLQC LESQKRRRLL GEAPPPRQVG 300 ADPTAAANMA VLPSQPDHQG GGGVPFFPAP NLPLNPNDPI KFVDFETGLR EETAEIKSCF 360 ADVEVKVLGG DAMIKILSQR RPGQLIKAIA ALEDLQLKIL HTNITTIEQT VLYCFKVASE 420 SRFTAEDIAS SVQQIFSFIH ANTASM

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MEKEENNYSA AFLPTNFNGL DYTLDHHHDE DQQQQQMNSS HVDLTSSSHE NNNNGMINYL  60
MNDHHHDQLQ LQHQQPQQTQ HPPPAGFSGA STTSFDKLSF ADVMQFADFG PKLALNQTKI  120
SEEESGIDPV YFLKFPVLND KLDDDDDQSL MLPRQDGPDS HQEERFTKSG EEEETRGVSG  180
STNSVQLRFL GDGVPNPRGG LPELPKNKRK RPRSTKTSQE VESQRMTHIA VERNRRKQMN  240
EHLRVLRSLM PGSYVQRGDQ ASIIGGAIDF VRELEQLLQC LESQKRRRLL GEAPPPRQVG  300
ADPTAAANMA VLPSQPDHQG GGGVPFFPAP NLPLNPNDPI KFVDFETGLR EETAEIKSCF  360
ADVEVKVLGG DAMIKILSQR RPGQLIKAIA ALEDLQLKIL HTNITTIEQT VLYCFKVASE  420
SRFTAEDIAS SVQQIFSFIH ANTASM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	236	RMTHIAVERNRR
2	285	289	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-123	bHLH family protein