PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0412071

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 553aa MW: 59516.9 Da PI: 6.3365

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0412071	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.2e-09	364	411	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RcHm_v2.0_Chr4g0412071 364 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 411 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MEKDSNSAAP SWNPSSLMQS NELHCAPQQL PNSYFNANWD NSMDQSDPFE SALSSMVSSP 60 AASNAVGATA FPGGEGGGDM IREVIGRLGS ICNSGDISSL SYNNSTNNSC YSTPLNSSPP 120 TKLNLSMVDP QMRGNLPVPA PSSHPTLAPF AADPGFVERA ARFSSFGNFG GGLNGQFNLN 180 EAELAYRSML KLDSGKLSRA SSNQSLRSQM GGVQESSIKS SSPQDGNAIP DKKFSRFSRS 240 STPENGELGD SREGSSVSEQ IPAGDLSVKA ENASISRKRK AVPRGKAKET SSSPSVKNGK 300 AVTEEQPNAK RSKTDEASGN EKETQKSNKE PNGGSKATKD SSEPVEPPKD YIHVRARRGQ 360 ATDSHSLAER VRREKISERM KFLQDLVPGC NKVTGKAVML DEIINYVQSL QRQVEFLSMK 420 LSTVNPRMDL NMEALLSKEI LQSQGALQNA LYQLDSAVPA SFPFGYQPQQ LPALHSNGIS 480 NETETQFPVT LNATLTQNST MQSPAFDRFG GANLQAPQFF EDDLQSMVQM GFGQIEQQSL 540 HGSGASAHMK VEH

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MEKDSNSAAP SWNPSSLMQS NELHCAPQQL PNSYFNANWD NSMDQSDPFE SALSSMVSSP  60
AASNAVGATA FPGGEGGGDM IREVIGRLGS ICNSGDISSL SYNNSTNNSC YSTPLNSSPP  120
TKLNLSMVDP QMRGNLPVPA PSSHPTLAPF AADPGFVERA ARFSSFGNFG GGLNGQFNLN  180
EAELAYRSML KLDSGKLSRA SSNQSLRSQM GGVQESSIKS SSPQDGNAIP DKKFSRFSRS  240
STPENGELGD SREGSSVSEQ IPAGDLSVKA ENASISRKRK AVPRGKAKET SSSPSVKNGK  300
AVTEEQPNAK RSKTDEASGN EKETQKSNKE PNGGSKATKD SSEPVEPPKD YIHVRARRGQ  360
ATDSHSLAER VRREKISERM KFLQDLVPGC NKVTGKAVML DEIINYVQSL QRQVEFLSMK  420
LSTVNPRMDL NMEALLSKEI LQSQGALQNA LYQLDSAVPA SFPFGYQPQQ LPALHSNGIS  480
NETETQFPVT LNATLTQNST MQSPAFDRFG GANLQAPQFF EDDLQSMVQM GFGQIEQQSL  540
HGSGASAHMK VEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	4e-71	bHLH family protein