PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0409001

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 433aa MW: 46602.5 Da PI: 10.1557

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0409001	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	6.9e-11	368	413	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq RcHm_v2.0_Chr4g0409001 368 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 413 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MYEQFPLEGT EKQHVRRLSK LSSKIRKVVL QRLPSPAGEF IFLRISPIKQ SLTLSKTDFT 60 FHSSHKTRKK LKLLLRLLVL MYPSSSSSSS QKSMGPSPTG ITRYGSAPGS LLTSAVDSVI 120 GAVAEREFSP LRPASFVGRY LSGGGGADGD SSSLTSESTF RVNPSNANKE ATKPLPRSYG 180 LGELAAAIGS SSSTSCSSSS LVRQRSSPAG FLSHLTDNNG GFSVTRGSGS YSSQGGPNGG 240 HGGTRLKSQL SFTRQDSLSQ ISEVSENAVE GVSSTSGQHS AMHSYPASSF GMDSWDNTNS 300 IVFSAPTSKR AKNMDGDIFN CLNTLESQFS LPQTTLEMAT VEKLLHIPED SVPCKIRAKR 360 GCATHPRSIA ERERRTRISG KLKKLQDLVP NMDKQTSYAD MLDLAVQHIK GLQNQVQNLH 420 KDLEGCTCGC KPT

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MYEQFPLEGT EKQHVRRLSK LSSKIRKVVL QRLPSPAGEF IFLRISPIKQ SLTLSKTDFT  60
FHSSHKTRKK LKLLLRLLVL MYPSSSSSSS QKSMGPSPTG ITRYGSAPGS LLTSAVDSVI  120
GAVAEREFSP LRPASFVGRY LSGGGGADGD SSSLTSESTF RVNPSNANKE ATKPLPRSYG  180
LGELAAAIGS SSSTSCSSSS LVRQRSSPAG FLSHLTDNNG GFSVTRGSGS YSSQGGPNGG  240
HGGTRLKSQL SFTRQDSLSQ ISEVSENAVE GVSSTSGQHS AMHSYPASSF GMDSWDNTNS  300
IVFSAPTSKR AKNMDGDIFN CLNTLESQFS LPQTTLEMAT VEKLLHIPED SVPCKIRAKR  360
GCATHPRSIA ERERRTRISG KLKKLQDLVP NMDKQTSYAD MLDLAVQHIK GLQNQVQNLH  420
KDLEGCTCGC KPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	2e-86	bHLH family protein